LOOS 4.1.0
The Lightweight Object Oriented Structural analysis library/toolkit
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Supported File Formats

LOOS reads the native file formats for most major biomolecular simulation packages.

Structure Files

Package File Suffix Notes
Amber prmtop
CHARMM/NAMD pdb
CHARMM/NAMD psf
CHARMM crd
Gromacs gro
Tinker xyz

Trajectory Files

Package File Suffix Notes
Amber nc, netcdf velocities
Amber crd, mdcrd velocities (if NetCDF)
Amber inpcrd, rst, rst7
CHARMM/NAMD dcd
CHARMM/NAMD pdb concatenated PDBs or sets of PDBs
Gromacs xtc
Gromacs trr velocities, pressure, virial, forces
(Only velocities available with Trajectory Class)
Tinker arc

LOOS can write structures out in PDB format or a native pseudo-xml format, and can write trajectories in either DCD or XTC format.