sfactories.hpp

/*
  This file is part of LOOS.
 
  LOOS (Lightweight Object-Oriented Structure library)
  Copyright (c) 2008, Tod D. Romo, Alan Grossfield
  Department of Biochemistry and Biophysics
  School of Medicine & Dentistry, University of Rochester
 
  This package (LOOS) is free software: you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
  the Free Software Foundation under version 3 of the License.
 
  This package is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  GNU General Public License for more details.
 
  You should have received a copy of the GNU General Public License
  along with this program.  If not, see <http://www.gnu.org/licenses/>.
*/
 
 
 
 
 
 
#if !defined(LOOS_SFACTORIES_HPP)
#define LOOS_SFACTORIES_HPP
 
 
 
#include <string>
 
#include <loos_defs.hpp>
 
namespace loos {
 
  std::string availableSystemFileTypes(const std::string& prefix = "");
  std::string availableTrajectoryFileTypes(const std::string& prefix = "");
  std::string availableOutputTrajectoryFileTypes(const std::string& prefix = "");
 
  pAtomicGroup createSystemPtr(const std::string& filename, const std::string& filetype);
  pAtomicGroup createSystemPtr(const std::string& filename);
 
 
  AtomicGroup createSystem(const std::string& filename);
  AtomicGroup createSystem(const std::string& filename, const std::string& filetype);
 
 
  pTraj createTrajectory(const std::string&, const AtomicGroup&);
  pTraj createTrajectory(const std::string&, const std::string&, const AtomicGroup&);
 
 
  pTrajectoryWriter createOutputTrajectory(const std::string& filename, const std::string& type, const bool append = false);
  pTrajectoryWriter createOutputTrajectory(const std::string& filename, const bool append = false);
 
};
 
 
#endif