LOOS
4.1.0
The Lightweight Object Oriented Structural analysis library/toolkit
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Class Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
K
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
V
|
W
|
X
|
Y
|
Z
A
AbstractObserver
(
loos
)
Action
(
loos::internal
)
AggregateOptions
(
loos::OptionsFramework
)
AlignedVirtualTrajectory
(
loos.pyloos.trajectories
)
Amber
(
loos
)
AmberNetcdf
(
loos
)
AmberRst
(
loos
)
AmberTraj
(
loos
)
AndSelector
(
loos
)
ANM
(
ENM
)
AscendingSort
(
loos
)
Atom
(
loos
)
AtomCoordsEquals
(
loos
)
AtomEquals
(
loos
)
AtomicGroup
(
loos
)
AtomicNumberDeducer
(
loos::internal
)
AtomNameSelector
(
loos
)
AtomSelector
(
loos
)
AverageLinkage
(Clustering)
B
Backbone
(
loos::internal
)
BackboneSelector
(
loos
)
BadSpringFunction
(
ENM
)
BadSpringParameter
(
ENM
)
BasicConvergence
(
loos::OptionsFramework
)
BasicMatrixFormatter
(
loos::internal
)
BasicOptions
(
loos::OptionsFramework
)
BasicProgress
(
loos
)
BasicSelection
(
loos::OptionsFramework
)
BasicSplitBy
(
loos::OptionsFramework
)
BasicTrajectory
(
loos::OptionsFramework
)
BasicWater
(
loos::OptionsFramework
)
BoundFmt
(
loos
)
BoundSuperBlock
(
ENM
)
BulkedWaterFilter
(
loos::DensityTools
)
BulkEstimator
(
loos::DensityTools
)
C
CalcDensity
CalcDipole
CalcHeight
CalcMolOrder
CalcOrientVector
CalcProperty
CalcPropertyBase
CAlphaSelector
(
loos
)
CCPDB
(
loos
)
CHARMM
(
loos
)
ClusteringOptions
(Clustering)
ColMajor
(
loos::Math
)
ConstBonded
(
ENM
)
ConvexHull
(loos.pyloos.ConvexHull)
Coord
(
loos
)
D
DCD
(
loos
)
DCDWriter
(
loos
)
DensityGrid
(
loos::DensityTools
)
DensityGridIterator
(
loos::DensityTools
)
DensityGridPlane
(
loos::DensityTools
)
DensityGridRow
(
loos::DensityTools
)
DescendingSort
(
loos
)
DistanceCutoff
(
ENM
)
DistanceWeight
(
ENM
)
drop
(
loos::internal
)
DualWorker
dup
(
loos::internal
)
E
Edge
(loos.Voronoi.Voronoi)
ElasticNetworkModel
(
ENM
)
DCD::EndOfFile
(
loos
)
equals
(
loos::internal
)
ErrorWithAtom
(loos::HBonds)
EstimatingCounter
(
loos
)
ExponentialDistance
(
ENM
)
extractNumber
(
loos::internal
)
F
FileError
(
loos
)
FileOpenError
(
loos
)
FileReadError
(
loos
)
FileReadErrorWithLine
(
loos
)
FileWriteError
(
loos
)
FlexLexer
Fmt
(
loos
)
FormFactor
(
loos
)
FormFactorSet
(
loos
)
FullHelp
(
all_stacking
)
FullHelp
(hierarchical-cluster)
FullHelp
(
packing_score_per_res
)
FullHelp
(
scattering
)
FullHelp
(
set_segids
)
FullHelper
(loos.pyloos.options)
G
greaterThan
(
loos::internal
)
greaterThanEquals
(
loos::internal
)
Gromacs
(
loos
)
H
HAC
(Clustering)
HBondDetector
(
loos
)
HCA
(
ENM
)
Header
HeavyAtomSelector
(
loos
)
HeavySolventSelector
(
loos
)
Hydrogen
(
loos::internal
)
HydrogenSelector
(
loos
)
I
IndexSelector
(
loos
)
AtomicGroup::Iterator
(
loos
)
K
Kernel
(
loos
)
KernelSelector
(
loos
)
KGS
(Clustering)
L
lessThan
(
loos::internal
)
lessThanEquals
(
loos::internal
)
LineReader
(
loos
)
logicalAnd
(
loos::internal
)
logicalNot
(
loos::internal
)
logicalOr
(
loos::internal
)
logicalTrue
(
loos::internal
)
LOOSError
(
loos
)
LoosOptions
(loos.pyloos.options)
M
Master
matchRegex
(
loos::internal
)
matchStringAsRegex
(
loos::internal
)
Matrix
(
loos::Math
)
Matrix44
(
loos
)
MatrixReadError
(
loos
)
MatrixReadImpl
(
loos
)
MatrixReadImpl< T, Math::Triangular, S >
(
loos
)
MatrixReadImpl< T, P, Math::SparseArray >
(
loos
)
MatrixWriteImpl
(
loos
)
MatrixWriteImpl< T, Math::Triangular, S, F >
(
loos
)
MatrixWriteImpl< T, P, Math::SparseArray, F >
(
loos
)
MDTraj
(
loos
)
MDTrajTraj
(
loos
)
MMCIF
(
loos
)
ModelWithCoords
(
loos::OptionsFramework
)
MultiTrajectory
(
loos
)
MultiTrajOptions
(
loos::OptionsFramework
)
N
NAMDBin
(
loos.pyloos.NAMDBin
)
NonzeroDensity
(
loos::DensityTools
)
NotSelector
(
loos
)
NullEstimator
(
loos::DensityTools
)
NumericalError
(
loos
)
O
OptionsError
(
loos
)
OptionsPackage
(
loos::OptionsFramework
)
OrSelector
(
loos
)
OutputPrefix
(
loos::OptionsFramework
)
OutputTrajectoryNameBindingType
(
loos::internal
)
OutputTrajectoryOptions
(
loos::OptionsFramework
)
OutputTrajectoryTypeOptions
(
loos::OptionsFramework
)
P
ParseError
(
loos
)
Parser
(
loos
)
ParserDriver
(
loos
)
PDB
(
loos
)
PDBTraj
(
loos
)
PercentProgress
(
loos
)
PercentProgressWithTime
(
loos
)
PercentTrigger
(
loos
)
PeriodicBox
(
loos
)
PreciseMatrixFormatter
(
loos
)
ProgressCounter
(
loos
)
PSF
(
loos
)
pushAtomChainId
(
loos::internal
)
pushAtomId
(
loos::internal
)
pushAtomIndex
(
loos::internal
)
pushAtomName
(
loos::internal
)
pushAtomResid
(
loos::internal
)
pushAtomResname
(
loos::internal
)
pushAtomSegid
(
loos::internal
)
pushFloat
(
loos::internal
)
pushInt
(
loos::internal
)
pushString
(
loos::internal
)
R
RangeItem
(
loos::internal
)
RangeParser
(
loos::internal
)
RegexFmt
Region
(loos.Voronoi.Voronoi)
Remarks
(
loos
)
RequiredArguments
(
loos::OptionsFramework
)
ResidRangeSelector
(
loos
)
RnaSuite
(
loos
)
RowMajor
(
loos::Math
)
S
ScanfFmt
ScientificMatrixFormatter
(
loos
)
SegidSelector
(
loos
)
SharedArray
(
loos::Math
)
SharedPeriodicBox
(
loos
)
SimpleAtom
(loos::HBonds)
SimpleCounter
(
loos
)
SimpleMeta
(
loos::DensityTools
)
Simplex
SingleWorker
SolventSelector
(
loos
)
SortDatum
SparseArray
(
loos::Math
)
SpringFunction
(
ENM
)
StreamWrapper
(
loos
)
SuperBlock
(
ENM
)
SuperBlockDecorator
(
ENM
)
SuperRegion
(loos.Voronoi.Voronoi)
SymmMatrix
(loos.pyloos.SymmMatrix)
SystemNameBindingType
(
loos::internal
)
T
Threader
Threshold
(
loos::DensityTools
)
ThresholdRange
(
loos::DensityTools
)
Timer
(
loos
)
TimeSeries
(
loos
)
TinkerArc
(
loos
)
TinkerXYZ
(
loos
)
ToolOptions
Trajectory
(
loos.pyloos.trajectories
)
Trajectory
(
loos
)
TrajectoryError
(
loos
)
TrajectoryNameBindingType
(
loos::internal
)
TrajectoryWithFrameIndices
(
loos::OptionsFramework
)
TrajectoryWriter
(
loos
)
Triangular
(
loos::Math
)
TriggerAlways
(
loos
)
TriggerEvery
(
loos
)
TRR
(
loos
)
TwoModelsWithCoords
(
loos::OptionsFramework
)
U
UniformSpringFunction
(
ENM
)
UniformWeight
(
loos
)
UniqueStrings
(
loos
)
UnitCell
(
loos
)
unordered_pair_eq
(
loos
)
unordered_pair_hash
(
loos
)
Atom::UnsetProperty
(
loos
)
UnsetProperty
(
loos
)
UserTimer
(
loos
)
V
Value
(
loos::internal
)
ValueStack
(
loos::internal
)
VirtualTrajectory
(
loos.pyloos.trajectories
)
VoronoiError
(loos.Voronoi.Voronoi)
VoronoiWrapper
(loos.Voronoi.Voronoi)
VSA
(
ENM
)
W
WallTimer
(
loos
)
WaterFilterAxis
(
loos::DensityTools
)
WaterFilterBase
(
loos::DensityTools
)
WaterFilterBlob
(
loos::DensityTools
)
WaterFilterBox
(
loos::DensityTools
)
WaterFilterContacts
(
loos::DensityTools
)
WaterFilterCore
(
loos::DensityTools
)
WaterFilterDecorator
(
loos::DensityTools
)
WaterFilterRadius
(
loos::DensityTools
)
WaterHistogrammer
(
loos::DensityTools
)
Weights
(
loos
)
WeightsFromFile
(
loos
)
WeightsOptions
(
loos::OptionsFramework
)
X
XDRDataSizeError
(
loos
)
XDRReader
(
loos::internal
)
XDRWriter
(
loos::internal
)
XEDMWriter
(
loos::DensityTools
)
XForm
(
loos
)
XTC
(
loos
)
XTCWriter
(
loos
)
Y
yyFlexLexer
Z
ZClipEstimator
(
loos::DensityTools
)
ZClippedWaterFilter
(
loos::DensityTools
)
ZSliceEstimator
(
loos::DensityTools
)
ZSliceSelector
(loos.pyloos.ConvexHull)
ZSliceSelector
(loos.Voronoi.Voronoi)
ZSliceSelector
(
loos
)
Generated by
1.10.0
1.10.0